Friday, June 23, 2017

Refereeing papers: recent experiences at the coal face

I am not a big fan of the peer review process. Too often it is a superficial ritual that adds little scientific value. Nevertheless, when it does work I think it can be very valuable. Here are some of my recent experiences that I thought were rather positive, and may be marginally interesting to readers.

I was sent a paper by JCP to review. Overall, I liked it but I thought it would benefit from some significant revisions. In a weird coincidence, I was visiting the same institution as some of the authors. I have been recently challenged about whether peer review really should be anonymous [see this discussion of SciPost] and so I took a risk. I signed my report and sent a copy to all the authors and told them I would be happy to meet to discuss the paper. We met and had a nice discussion. However, it was interesting that JCP told me that they had deleted my self-identification as it was against their policy.

I was sent a paper by PRL to review that I (and other referees) took a strong dislike to. The cover letter was also "Interesting". I wrote a concrete critical report. However, for the first time ever, I used the box for "Comments that will only be seen by the Editors". I said the authors had inappropriately used and cited my own work, that the paper was in the class "Not even wrong", and that if PRL published it, PRLs reputation in a certain community would suffer. Maybe I am a coward, but I am glad I was anonymous.

I got a paper I liked to review from JCP. However, the authors did not engage with a whole physics literature that was relevant to the paper and they needed to use it to sharpen their results. I think the final paper will be much better and more interesting.

A recent paper with my postdoc got two critical but constructive reports from PRB. This required some new calculations and comparisons but was much better as a result. Today we heard it was accepted.

I now decline all referee requests from luxury journals. I have limited time and would prefer to invest in journals that I think are making a positive contribution to science.

Have you had any recent positive experiences as a referee or received a helpful report?

Monday, June 19, 2017

The scientific relevance of your hobby

On the one hand to make progress in science you need to focus, work hard, and build your expertise. This leads some to think that it best that they not pursue outside interests and hobbies such as art, music, craft, puzzles, games, ...
However, scientific discoveries, particularly big ones, often involve creativity, serendipity, or thinking outside the box.

I noticed two examples of this recently.
The first was how fascination with a cheap child's toy led to the key idea behind the development of extremely cheap centrifuge [paperfuge] for health diagnostics in the Majority World.

The second example was a New York Times article about a recent paper that argues that key to Pasteur's discovery of molecular chirality was his interest in art.

Another example, is Harry Kroto who shared The Nobel Prize in Chemistry for the discovery of buckyballs. He credited playing with Meccano as a child as very important in his scientific development.

Can you think of other examples?

Friday, June 16, 2017

Why do some people think they can get something for nothing?

This is a small rant. I want to stress that it is not because of anything directly involving me. Rather it comes from things that come across my desk and frustrations that friends and colleagues vent to me.

Here is a sample situation.
Professor A in Department B at University C wants to apply to funding agency D for a joint multi-million dollar research grant with Professor E in Department F at University G. There is also an industrial partner, company H. Obviously, if the application is successful then A to H will all benefit. But now comes the rub. All parties need to commit to contributing something: whether it is time, lab space, matching funds, intellectual property rights, reduced teaching or admin. responsibilities, hiring new people, giving someone a permanent job, equipment, infrastructure, ..... and they need to divide up the grant if they get it.

My frustration and concern are that I encounter cases where one or more of the parties are completely unreasonable about how little they should contribute, if at all. They seem to want something for nothing. Furthermore, they will persist in this even if it means the application won't proceed or has virtually no chance of success. They fail to believe that there will be other applicants who will have strong support and contributions from all the parties involved.

I know that resources are scarce, budgets are tight, and people want to drive a hard bargain. That is not what I am talking about. The real "Art of the Deal" is not the Trump version, but compromising to a win-win situation, not sabotaging the deal because of fantasy and blind selfishness.

Do you encounter situations like this?

Tuesday, June 13, 2017

How might we teach students to actually think?

Four important goals to me are to teach students:
1. To think.
2. To think like a physicist.
3. To think like a condensed matter physicist.
4. The specific technical content of the course.

The last one is arguably easier than the others.
I also think it is the least important. Others will disagree.
We don't reflect enough on how we might achieve the other goals.
The biggest challenge of improving education in the Majority World is not lack of material resources but changing the culture of rote learning and teaching critical thinking.
[This is highlighted in a NYTimes piece about China and a very funny video about India ITs].

Last week the UQ School of Maths and Physics Teaching Seminar was given by Peter Ellerton who works for the UQ Critical Thinking project.

The slides from a similar talk are here.
In the talk he mostly walked us through the three graphics shown here.
[If you click on the image you can see a high resolution .pdf]

The main value of all this is it puts names, categories, and questions on what I want to do. I found the third graphic the most helpful because it has some very specific questions we can ask students to get them to reflect more on what they are learning and in the process learn to think more critically.

Thursday, June 8, 2017

A lucid lecture on the last 50 years of superconductivity

At the weekly condensed matter theory cake meeting today we watched a video of a KITP blackboard talk given by Piers Coleman in 2015.
Superconducting Surprises: five decades of discovery, in both temperature and time!

It is a very nice exposition of the history and some of the key physics.

A couple of minor comments.

Organic superconductors were discovered in 1980 not 1973.

Piers claims that the difference between the thermodynamic entropy of the superconducting and metallic states (determined from integrating the temperature dependent specific heat) is related to the quantum entanglement entropy of the superconducting ground state.
The relationship between entanglement entropy (defined on a pure quantum state (at zero temperature) which is divided in two) and thermal entropies (defined for a bulk system in a mixed state at finite temperature) is an incredibly subtle and complex issue that I don't think is resolved. See for example the discussion in this paper.

Monday, June 5, 2017

The challenge of applied research

Last friday we were fortunate to have David Sholl give a physics colloquium at UQ,
``What Does Quantum Mechanics Have To Do With The Chemical Industry? Reflections On A Journey From Pure To Applied Research.''
Here are the slides.

David has a background in theoretical physics and has been particularly successful at using atomistic simulations to study problems that chemical engineers care about. He is co-author of a book, Density Functional Theory: A Practical Introduction
His three main points in the talk were
  • Applied research is worth doing and is intellectually satisfying
  • Applied research relies on fundamental insights 
  • How to waste time and money doing applied research
The piece of science I found most interesting was the figure below which shows how the calculated self-diffusion constant D of small hydrocarbons in a zeolitic imidazolate framework varies with the size of the hydrocarbon molecule.
Note how D varies over 14 orders of magnitude.

Some of the key physics is that this large variation arises because the diffusion constant is essentially determined by the activation energy associated with the transfer of a molecule through the molecular hole between adjacent pores. When the molecular size is comparable to the hole size, D rapidly diminishes because of steric effects.
It would be nice to have "simple" theory of the correlation.

The figure is taken from the paper
Temperature and Loading-Dependent Diffusion of Light Hydrocarbons in ZIF-8 as Predicted Through Fully Flexible Molecular Simulations 
Ross J. Verploegh, Sankar Nair, and David S. Sholl

Friday, June 2, 2017

The educational value of undergraduate research projects

This past semester I have been supervising two undergraduate research projects. One student is doing a one semester course (1/4 of the students load) for a third year student. The second student has a year long project for a fourth year student (1/2 of their load). I am very happy with how both have gone in terms of their educational value. The amount of research results is of secondary importance to me. Previously, I posted about possible ingredients for a good undergrad project. Both students are working on a simple model for hydrogen bonds. I recommend this because it has an "easy" learning curve and so they can start "doing science" quick. It also has a nice mix of theory and experiment, chemistry and physics.

Things that struck me as particularly valuable include the following very basic things. Some of which relate to basic but important skills.

Seeing calculations to completion. 
In an undergrad problem set or exam the student has limited time and gets partial marks for incomplete or wrong answers. In research you have to keep working on the problem until you have an answer and have checked it enough that you are confident it is the correct answer.

Personal attention.
Each week they get to meet one-to-one with a faculty member and get advice and feedback.

Learning that they really do matter and you have to get them right. This converting between different unit systems.

Writing and debugging code.
Even a short Matlab or Mathematica code.

Reading papers not textbooks.
Gifted students can find textbooks quite manageable and understandable. Papers are in a different league.

Experiencing what research is often like.
Hard. Confusing. Boring. Tedious... But, progress and understanding can be quite satisfying.

Communication skills.
Giving a talk and writing reports, and getting feedback on them.

Job skills.
Time management. Showing up for meetings on time. Writing meeting summaries. Coming up with action plans. Listening to constructive criticism. Working with others.